anndata==0.12.0
array-api-compat==1.12.0
asttokens==3.0.0
biom-format==2.1.16
certifi==2025.7.14
charset-normalizer==3.4.2
click==8.2.1
clustergrammer2==0.18.0
combat==0.3.3
comm==0.2.2
contourpy==1.3.2
crc32c==2.7.1
cycler==0.12.1
decorator==5.2.1
donfig==0.8.1.post1
executing==2.2.0
fastcluster==1.3.0
filelock==3.18.0
fonttools==4.59.0
fsspec==2025.7.0
h5py==3.14.0
idna==3.10
inmoose==0.8.0
ipython==9.4.0
ipython_pygments_lexers==1.1.1
ipywidgets==8.1.7
jedi==0.19.2
Jinja2==3.1.6
joblib==1.5.1
jupyterlab_widgets==3.0.15
kiwisolver==1.4.8
legacy-api-wrap==1.4.1
MarkupSafe==3.0.2
matplotlib==3.10.3
matplotlib-inline==0.1.7
mpmath==1.3.0
narwhals==1.48.0
natsort==8.4.0
networkx==3.5
numcodecs==0.16.1
numpy==2.3.1
packaging==25.0
pandas==2.3.1
parso==0.8.4
patsy==1.0.1
pexpect==4.9.0
pillow==11.3.0
plotly==6.2.0
prompt_toolkit==3.0.51
ptyprocess==0.7.0
pure_eval==0.2.3
Pygments==2.19.2
pyparsing==3.2.3
python-dateutil==2.9.0.post0
pytz==2025.2
PyYAML==6.0.2
requests==2.32.4
scikit-bio==0.7.0
scikit-learn==1.7.1
scipy==1.15.3
seaborn==0.13.2
six==1.17.0
stack-data==0.6.3
statsmodels==0.14.5
sympy==1.14.0
threadpoolctl==3.6.0
torch==2.7.1
tqdm==4.67.1
traitlets==5.14.3
typing_extensions==4.14.1
tzdata==2025.2
urllib3==2.5.0
wcwidth==0.2.13
widgetsnbextension==4.0.14
zarr==3.1.0

[dev]
black[jupyter]
ruff
pytest
ipykernel

[docs]
sphinx
sphinx-book-theme
myst-nb
ipywidgets
sphinx-new-tab-link!=0.2.2
jupytext
sphinx-copybutton
anndata
